CDS

Accession Number TCMCG057C23293
gbkey CDS
Protein Id XP_018491060.1
Location complement(join(5140079..5140186,5140297..5140380,5140475..5140705,5140803..5140958,5141046..5141142,5141236..5141412,5141507..5141889,5142113..5142211,5142316..5142499,5142573..5142718,5142801..5142861,5143093..5143735,5144065..5144212,5144317..5144391,5144688..5144841,5145088..5145188,5145266..5145349,5145507..5145652,5145752..5145920,5146073..5146174,5146260..5146334,5146421..5146501,5146585..5146691,5146855..5146920,5147003..5147148,5147250..5147384,5147541..5147677,5148040..5148114,5148198..5148383,5148561..5148683,5148770..5148880,5149204..5149296,5149499..5149570,5149681..5149803,5149885..5149997,5150198..5150294,5150615..5150788,5150914..5151051,5151224..5151450,5151531..5151693))
Gene LOC108861641
GeneID 108861641
Organism Raphanus sativus

Protein

Length 1929aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018635558.1
Definition PREDICTED: rRNA biogenesis protein RRP5-like isoform X2 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category A
Description Protein RRP5 homolog
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
KEGG_ko ko:K14792        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0000460        [VIEW IN EMBL-EBI]
GO:0000462        [VIEW IN EMBL-EBI]
GO:0000466        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005886        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006364        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008134        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009553        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016072        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0030490        [VIEW IN EMBL-EBI]
GO:0030684        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032040        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0042274        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048229        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0071944        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGTGGCTCCGTCGAAAAAAGTTCAAAGTGGTAAACGTAACGATTCTACAAAAGCATTCAAGTCATCATCGAAGAAACCGTTCAAGAAGACGAAGGACGATGTTGCTGCAAGGTCCGAAGCCATGGCTCTGCAGCTCGAAGACGTTCCTGACTTTCCTCGAGGGGGAGGCACTTCTCTGAGCAAAACAGAGCGTAAGAAAATATACGAAGAAGTCGACGCTGAGTTTGAAGCAGCAGAAGATGATGATGAGCGTGTTTCCAAGAGGAGTAAAAAAGGAGGTAAACCTAAGAAGAAGAGAAACCCTAGCGATGTTGATGAATTGGGATCTCTTTTTGACGGTGGTTTGACTGGCAAACGGCCACGATATGCCAATAAGATTACCATTAAGAATATCTCTCCGGGAATGAAGCTTCTTGGAGTTGTTACTGAAGTAAACCAGAAGGATATTGTAATTAGTCTTCCAGGGGGGTTACGTGGATTAGTTCGCGCAAGCGAGGCATTGGATTTTACGGATTTCGGAACTGAGGACGATGAAAATGAACTCCTTCGAGACATTTTTTCTGTGGGCCAGCTTGTTCCTTGCCTTGTATTGCAGTTAGATGATGATAAGAAAGAGGCGGGCAAAAGGAAAATATGGCTTTCGTTGCGCCTTTCTTTGTTGCACAAGGGGTTCAGTTTGGATTCCTTTCAATCCGGAATGGTAGTCACTGCAAACGTGAAAAGCGTGGAAGATCATGGTTATATCCTTCACTTCGGATTGCCTTTTATCACAGGATTTATCAAAAAAAGCAAAGATGGGAATCAGGAGCTGAAGACTGGGCAGCTTATTCAGGGCGTGGTTACAAATATTGATAAAGAAAGGAAAATTGTTTCTCTTAGTTCCGACCCAGATTCAGTGGCGAAGTGTGTGACCAAGGATCTTAGTGGAATGTCGTTTGATCTTCTAATCCCAGGCATGATGGTTAATGCCCGTGTGCAATCTGTCCTTGAGAATGGGGTACTGTTAGGATTTCTTATGTACTTCACTGGAACGATTGATTTATTCCATTTACAAAATCCAATGTGTAACAAGAGCTGGAAGGATGAATATACTCAGACTAAGATGGTCAATGCTAGAATATTGTTTATGGATCCATCAACTAGAGCTGTTGGTTTGACGTTAAACCCACATCTTGTTGGTAACAAGGCTCCTCCATTGCATGTGTCTAGCGGAGACATATTTGAGGAAGCAAAAGTTGTCCGTGTTGATAAATCAGGCCTTCTTCTTGAACTCCCTTCTGAGCCTATTTCAACTCCAGCATATGTTAGCACATATGATGCAGCAGAAGATGAAGTAAATAAACTGGAAAAGAAGTTTAAGGAAGGAAACCGCATCCGTGTTCGAATCCTCGGCCTTAAGCAGATGGAGGGGTTGGCCATAGGGACTTTAAAGGAAAGTGCTTTTGAAGGTCCAGCTTTCACCCACTCAGATGTCAAGCCTGGTATGGTGACGAAGGCTAAGGTCATATCTGTTGATACATTTGGTGCCATTGTGCAATTTCCGGGTGGTTTGAAAGCAATGTGCCCACTTCGGCATATGTCTGAGTTTGAAGTTACGAAGCCCAGGAAAAAGTTCAAGGTTGGAGCTGAACTAACATTTCGGGTGCTTGGATGCAAATCAAAGAGAATAACTGTTACATGCAAGAAATCACTTGTCAAGTCTAAACTTCCGATATTGAGTTCTTACGCTGATGCAACTGAAGGGTTAGTGACACATGGCTGGATAACGAAGATTGAAAAGCATGGATGCTTTGTTCGCTTCTATAATGGGGTGCAAGGATTTGTTGCCAGATTTGAACTTGGTTTAGAGCCTGGAAGTGATCCCAATTCAGTGTTTCATGTCGGGGAGGTTGTCAAATGCAGAGTAACCAGTGCGGTTCATGGAACTCGAAGGATCAACCTCAGCTTTATGATAAATCCAACAAGTGTTTCTGAAGACGATTCTATTAAGTTAGGTAGTATTGTATCTGGGGTAATTGATAGTATAACTCCTCAGGCAGTCACTGTCCATGTTAAATCCAAAGGTTTGCTGAAGGGGACAGTTGCTGCTGAACATTTAGCAGATCATCATGACCAAGCAAAACTAATGATGTCACTTTTAAGACCTGGATTTGAGCTTGATAAGCTACTGATAATAGACATTGAAGGCAATAACTTGGCTCTCTCGTCAAAATATTCTCTCATTAAGCTTGCTGAAGAGCTTCCTTCGGATATTAGTCAGCTCCAGCCAAACTCAGTGGTTCATGGTTATGTTTGTAACTTGATTGAAAATGGCTGCTTCGTCCGTTTTCTGGGTCGGTTGACTGGTTTCGCTCCGAGAAGCAAGGCAATTGACGAACCCAGGGCAGATCTGTCAGAATCCTTCTTTGTTGGACAATCTGTTCGGGCTAATATAGTCGATATCAATCAAGAAAAAAGCAGGATAACTCTTTCATTGAAACAGTCATCTTGTGCTTCTGTAGATGCTTCTTTTATCCAGGAGTATTTCCTTACGGATGAGAAGATCTCGGACCTGCAATCATCTGATATTACTGAAAGTGAATGTAGTTGGGTTGAGAAATTCTCTATTGGGAGCTTGGTCAAGGGAACAGTACATGAGCAAAATGACCTGGGTTTGGTGGTGAATTTTGACAATATTGATAACGTGCTCGGTTTCATACCTCAGTACCATTTGGGCGGAGCTACTTTGGAACACGGTTCTGTTGTCGAAGCAGTTGTTCTTGATATATCTAGGGCAGAGAGACTAGTTGATTTGTCTTTGCGGCCTGAGCTCATAAACAACTCAACCAAAGAGGTGTCCAATAGCCAGTCAAAAAAGAAACGTAGAAGAGGCATTTCCAAGGAACTGGAAGTCCACCAAAGGGTCAGCGCTGTTGTAGAGATTGTGAAGGAGCAATACTTGATTTTGTCGATTCCAGAGCATGGTTACACTATAGGATATGCGTCAATATCAGACTATAACACACAGAAGTTGTCAGTGAAACAATTTTCAACTGGACAAAGTGTTGTTGCGTCAGTGGAGGCTCTGCAAAACCCTATGACGTCTGGGAGGTTGCTTCTACTTCTTGACTCTGTTTCGGGTATTTCTGAGACAACCCCTTCTAAGAGGACAAAGAATAAATCCAGTTGTGACGTTGGTTCCGTCGTCCACGCCGAGATTACTGAAATAAAGCCTTTGGAAGTAAGAGTAAACTTTGGTCAAAGTTGCCGAGGAAGAATCCACATAACGGAGGTGGATGATGTAAGTACAAGTGAAGAACCTTTTTCCAAATTCAGAGTCGGGCAATCAGTGTCTGCAAGGGTTATTGCAAAACCCTCCCATACTAATATAAAAAAGAGTCAACTTTGGGAGCTCTCTGCAAAGCCTGCAGTACTTAGAGACTCCAGTGAATTGAATGGCATTCAAGTGAAGGAACAACTTGAGTTTGTTACTGGAGAGCGTGTCAGCGGATATGTCTACAAAGTGGATAAAGAATGGGTTTGGCTGGCAATATCTCGCAATGTGACGGCACGCGTATTCATTTTAGACACTGCATGCGACGCTCGTGAACTTGAGGAGTTTGAGAGGCGTTTTCCCATTGGTAAAGCTGTTTCAGGCTATGTTTTGACGTACAATAAAGAGAAGAAAACAGCACGGTTGGTTCAGCGTCCACTACTTGCTGTCCAGAAAAGCATTGCCAATGATGGAGGCTGTAAAAAGGATAGTAGCATTCCTGGTGATGATGCTACTCTATTCATTCATGAAGGAGACATTCTTGGTGGAAGAATTTCTAAGATACTTCCTGGTGTTAGTGGACTCCGTGTGCAAATAGGTCCTTACGTGTTTGGAAGAGTTCATTTTACTGAAATCAACGATTCATGGGTCTCCAATCCATTAGATGGTTTTCACGAAGGCCAATTTGTCAAATGCAAGGTATTGGAAATTAGCAATTCTAGTAAAGGGACTTTGCAAATTGAATTGTCGTTACGGACATCTCTAGATGGCATGAGTTCCGACCATCTTTCAGAAGCTTCCAATAATAATGTCAATATATTCAAACGTTTTGAAAGAATTGAAGATCTTTCTCCTGATATGGCCGTCCAGGGTTATGTCAAGAATACGATGTCAAAAGGTTGTTTTATCATGCTTTCAAGGACACTCGACGCAAAAGTTCTATTGTCAAATTTAAGTGATACTTTTGTCAAGGATCCCGAAGTGGAGTTTCCAGTAGGGAAACTTGTAACTGGCAGGGTGTTGAATGTCGAGTCGTTATCCAAGCGGGTAGAAGTCACTTTGAAGAAAGGAAATGCGGGTGGGCAACCAAAATCTGAATCTTATGACTTGAAGCAATTCCATGTTGGAGACGTGATTTCGGGGAGCGTCAAACGTGTGGAGCCCTATGGCTTATTCATTACAATAGACAATACGAGCATGGTTGGGTTATGTCATAAATCACAGCTTTCTGATGATCGTATTGAAGATGTACAAGCCAGATATGAGGCTGGGGAAAGCGTCACCGCAAAGATTTTGAAGCTTGACGAGGAAAAGCAACGCATATCGCTTGGGATGAAGAGTTCTTATTTTATGAACGACGATGATGTCAAGGCACAGACACCGTCTGAAGAAAACGCTGATGAAGAAGACAGCATGGAATGTGATGCAGTCAATGACTCAAAGTCGGGAGTTCTTGCAGCAGTTGGTGATTTCGGATTCCAGGAAACAGGCTTTGAAAGACATAGTGGAACTTCTCTGGTCCTTTCCCAAGTTGAATCAAGGGCTTCTGTCCCTCCGCTTGAGGTTGACCTTGACGACATTGAGGAGTCGGGCTATGAGAACGATCAGAAAGAGAAACTACGTGGAGTCGACAAAGATGAAAAGAGCAAGAGAAGGGAAAAGCAGAAAGACAAGGAAGAAAGAGAGAAAAAAATACAAGCTGCTGAAGGAAGATTGCTGGAGAATCACGCTCCTGAGAGTGCTGATGAATTTGAGAAATTGGTTAGAAGCTCTCCAAATAGCAGCTTTGTCTGGATTAAGTATATGGCGTTCATGCTTAGTTTGGCTGATATTGAGAAAGCCAGATCCATTGCTGAGAGGGCCTTGAGGACTATAAATATTCGTGAAGAAGATGAGAAGCTAAACATATGGGTTGCCTACTTCAATTTGGAAAATGAACATGGAAGTCCTCCAGAGGAAGCTGTTAAGAAAGTTTTTGAAAGAGCCCGTCAATACTGTGACCCGAAGAAAGTTTACCACGCTCTCTTGGGCGTGTACGAGAGAACTGAGCAATATAAACTGGCTGATAAGCTGCTTGATGAGATGATCAAGAAGTTCAAGCAATCATGCAAGGTTTGGTTAAGGAAAGTACAAAGTTATCTAAAGCAAAACGAGGAAGACATTCAGTCCATCGTGAATCGTGCCTTGCTATGTCTTCCGCGCCATAAGCACATTAAATTCATATCACAAACGGCTATTCTTGAGTTCAAATGTGGAGATGCAGACAGAGGGAGATCATTTTTTGAAGGCGTTCTTAGGGAATACCCAAAAAGAACAGACTTGTGGAGTGTTTATCTTGACCAGGAGATTCGGTTGGGTGAAGTTGATGTGATTAGATCTTTGTTCGAGAGAGCTATTAGCTTGAGCTTGCCTCCTAAGAAGATGAAGTTTTTATTCAAGAAGTTCTTGGAATATGAGAAATCTTGTGGTGAAGAGGAGAGAGTCGAGTACGTGAAGCAAAGGGCAATGGAGTATGCAAACAGTGCCTTGGCCTGA
Protein:  
MVAPSKKVQSGKRNDSTKAFKSSSKKPFKKTKDDVAARSEAMALQLEDVPDFPRGGGTSLSKTERKKIYEEVDAEFEAAEDDDERVSKRSKKGGKPKKKRNPSDVDELGSLFDGGLTGKRPRYANKITIKNISPGMKLLGVVTEVNQKDIVISLPGGLRGLVRASEALDFTDFGTEDDENELLRDIFSVGQLVPCLVLQLDDDKKEAGKRKIWLSLRLSLLHKGFSLDSFQSGMVVTANVKSVEDHGYILHFGLPFITGFIKKSKDGNQELKTGQLIQGVVTNIDKERKIVSLSSDPDSVAKCVTKDLSGMSFDLLIPGMMVNARVQSVLENGVLLGFLMYFTGTIDLFHLQNPMCNKSWKDEYTQTKMVNARILFMDPSTRAVGLTLNPHLVGNKAPPLHVSSGDIFEEAKVVRVDKSGLLLELPSEPISTPAYVSTYDAAEDEVNKLEKKFKEGNRIRVRILGLKQMEGLAIGTLKESAFEGPAFTHSDVKPGMVTKAKVISVDTFGAIVQFPGGLKAMCPLRHMSEFEVTKPRKKFKVGAELTFRVLGCKSKRITVTCKKSLVKSKLPILSSYADATEGLVTHGWITKIEKHGCFVRFYNGVQGFVARFELGLEPGSDPNSVFHVGEVVKCRVTSAVHGTRRINLSFMINPTSVSEDDSIKLGSIVSGVIDSITPQAVTVHVKSKGLLKGTVAAEHLADHHDQAKLMMSLLRPGFELDKLLIIDIEGNNLALSSKYSLIKLAEELPSDISQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSKAIDEPRADLSESFFVGQSVRANIVDINQEKSRITLSLKQSSCASVDASFIQEYFLTDEKISDLQSSDITESECSWVEKFSIGSLVKGTVHEQNDLGLVVNFDNIDNVLGFIPQYHLGGATLEHGSVVEAVVLDISRAERLVDLSLRPELINNSTKEVSNSQSKKKRRRGISKELEVHQRVSAVVEIVKEQYLILSIPEHGYTIGYASISDYNTQKLSVKQFSTGQSVVASVEALQNPMTSGRLLLLLDSVSGISETTPSKRTKNKSSCDVGSVVHAEITEIKPLEVRVNFGQSCRGRIHITEVDDVSTSEEPFSKFRVGQSVSARVIAKPSHTNIKKSQLWELSAKPAVLRDSSELNGIQVKEQLEFVTGERVSGYVYKVDKEWVWLAISRNVTARVFILDTACDARELEEFERRFPIGKAVSGYVLTYNKEKKTARLVQRPLLAVQKSIANDGGCKKDSSIPGDDATLFIHEGDILGGRISKILPGVSGLRVQIGPYVFGRVHFTEINDSWVSNPLDGFHEGQFVKCKVLEISNSSKGTLQIELSLRTSLDGMSSDHLSEASNNNVNIFKRFERIEDLSPDMAVQGYVKNTMSKGCFIMLSRTLDAKVLLSNLSDTFVKDPEVEFPVGKLVTGRVLNVESLSKRVEVTLKKGNAGGQPKSESYDLKQFHVGDVISGSVKRVEPYGLFITIDNTSMVGLCHKSQLSDDRIEDVQARYEAGESVTAKILKLDEEKQRISLGMKSSYFMNDDDVKAQTPSEENADEEDSMECDAVNDSKSGVLAAVGDFGFQETGFERHSGTSLVLSQVESRASVPPLEVDLDDIEESGYENDQKEKLRGVDKDEKSKRREKQKDKEEREKKIQAAEGRLLENHAPESADEFEKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAERALRTINIREEDEKLNIWVAYFNLENEHGSPPEEAVKKVFERARQYCDPKKVYHALLGVYERTEQYKLADKLLDEMIKKFKQSCKVWLRKVQSYLKQNEEDIQSIVNRALLCLPRHKHIKFISQTAILEFKCGDADRGRSFFEGVLREYPKRTDLWSVYLDQEIRLGEVDVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSCGEEERVEYVKQRAMEYANSALA